./runTests.py test/unit/math/prim/mat/functor/map_rect_test.cpp ------------------------------------------------------------ make -j1 test/unit/math/prim/mat/functor/map_rect_test /bin/sh: line 2: clang++: command not found echo "# In case of a compiler mismatch used by mpicxx and" >> lib/boost_1.66.0/user-config.jam echo "# the compiler used for Stan, consider configuring" >> lib/boost_1.66.0/user-config.jam echo "# the boost toolset here" >> lib/boost_1.66.0/user-config.jam echo "using mpi ;" >> lib/boost_1.66.0/user-config.jam cd lib/boost_1.66.0; ./bootstrap.sh Building Boost.Build engine with toolset gcc... tools/build/src/engine/bin.linuxx86_64/b2 Detecting Python version... 2.6 Detecting Python root... /usr Unicode/ICU support for Boost.Regex?... not found. Generating Boost.Build configuration in project-config.jam... Bootstrapping is done. To build, run: ./b2 To adjust configuration, edit 'project-config.jam'. Further information: - Command line help: ./b2 --help - Getting started guide: http://www.boost.org/more/getting_started/unix-variants.html - Boost.Build documentation: http://www.boost.org/build/doc/html/index.html cd lib/boost_1.66.0; ./b2 --user-config=user-config.jam --layout=system --with-mpi --with-serialization -j1 variant=release link=shared threading=multi runtime-link=shared Performing configuration checks - 32-bit : no - 64-bit : yes - arm : no - mips1 : no - power : no - sparc : no - x86 : yes Building the Boost C++ Libraries. Component configuration: - atomic : not building - chrono : not building - date_time : not building - exception : not building - graph : not building - mpi : building - python : not building - regex : not building - serialization : building - system : not building - thread : not building - timer : not building ...patience... ...patience... ...found 5854 targets... ...updating 135 targets... gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_archive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_iarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_iserializer.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_oarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_oserializer.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_pointer_iserializer.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_pointer_oserializer.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_serializer_map.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_text_iprimitive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_text_oprimitive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_xml_archive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/binary_iarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/binary_oarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/extended_type_info.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/extended_type_info_typeid.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/extended_type_info_no_rtti.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/polymorphic_iarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/polymorphic_oarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/stl_port.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/text_iarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/text_oarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/void_cast.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/archive_exception.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_grammar.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_iarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_oarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_archive_exception.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/codecvt_null.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/utf8_codecvt_facet.o gcc.link.dll bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/libboost_serialization.so.1.66.0 common.copy stage/lib/libboost_serialization.so.1.66.0 ln-UNIX stage/lib/libboost_serialization.so gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/broadcast.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/communicator.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/computation_tree.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/content_oarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/environment.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/exception.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/graph_communicator.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/group.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/intercommunicator.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/mpi_datatype_cache.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/mpi_datatype_oarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/packed_iarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/packed_oarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/packed_skeleton_iarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/packed_skeleton_oarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/point_to_point.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/request.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/text_skeleton_oarchive.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/timer.o gcc.link.dll bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/libboost_mpi.so.1.66.0 common.copy stage/lib/libboost_mpi.so.1.66.0 ln-UNIX stage/lib/libboost_mpi.so gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/list.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/list.hpp:10, from libs/python/src/list.cpp:5: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/list.hpp:10, from libs/python/src/list.cpp:5: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/long.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/long.hpp:10, from libs/python/src/long.cpp:5: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/long.hpp:10, from libs/python/src/long.cpp:5: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/dict.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/dict.hpp:10, from libs/python/src/dict.cpp:4: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/dict.hpp:10, from libs/python/src/dict.cpp:4: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/tuple.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/tuple.hpp:10, from libs/python/src/tuple.cpp:5: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/tuple.hpp:10, from libs/python/src/tuple.cpp:5: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/str.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/str.hpp:10, from libs/python/src/str.cpp:4: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/str.hpp:10, from libs/python/src/str.cpp:4: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/slice.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/slice.hpp:11, from libs/python/src/slice.cpp:1: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/slice.hpp:11, from libs/python/src/slice.cpp:1: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/converter/from_python.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/converter/registry.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/converter/type_id.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/enum.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/enum_base.hpp:8, from libs/python/src/object/enum.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/enum_base.hpp:8, from libs/python/src/object/enum.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from /usr/include/python2.6/Python.h:80:0, from ./boost/python/detail/wrap_python.hpp:151, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/object_core.hpp:10, from ./boost/python/object/enum_base.hpp:8, from libs/python/src/object/enum.cpp:6: libs/python/src/object/enum.cpp: In function 'boost::python::api::object boost::python::objects::{anonymous}::new_enum_type(const char*, const char*)': /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/enum.cpp:156:11: note: in expansion of macro 'Py_TYPE' Py_TYPE(&enum_type_object) = incref(&PyType_Type); ^~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/class.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/class.hpp:9, from libs/python/src/object/class.cpp:9: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/class.hpp:9, from libs/python/src/object/class.cpp:9: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from /usr/include/python2.6/Python.h:80:0, from ./boost/python/detail/wrap_python.hpp:151, from ./boost/python/detail/prefix.hpp:13, from libs/python/src/object/class.cpp:6: libs/python/src/object/class.cpp: In function 'PyObject* boost::python::objects::static_data()': /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/class.cpp:211:11: note: in expansion of macro 'Py_TYPE' Py_TYPE(&static_data_object) = &PyType_Type; ^~~~~~~ libs/python/src/object/class.cpp: In function 'boost::python::type_handle boost::python::objects::class_metatype()': /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/class.cpp:319:11: note: in expansion of macro 'Py_TYPE' Py_TYPE(&class_metatype_object) = &PyType_Type; ^~~~~~~ libs/python/src/object/class.cpp: In function 'boost::python::type_handle boost::python::objects::class_type()': /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/class.cpp:473:11: note: in expansion of macro 'Py_TYPE' Py_TYPE(&class_type_object) = incref(class_metatype().get()); ^~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/function.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/function.hpp:12, from ./boost/python/docstring_options.hpp:8, from libs/python/src/object/function.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/object/function.hpp:9, from ./boost/python/docstring_options.hpp:8, from libs/python/src/object/function.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from /usr/include/python2.6/Python.h:80:0, from ./boost/python/detail/wrap_python.hpp:151, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/object/function.hpp:8, from ./boost/python/docstring_options.hpp:8, from libs/python/src/object/function.cpp:6: libs/python/src/object/function.cpp: In constructor 'boost::python::objects::function::function(const boost::python::objects::py_function&, const boost::python::detail::keyword*, unsigned int)': /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/function.cpp:108:9: note: in expansion of macro 'Py_TYPE' if (Py_TYPE(&function_type) == 0) ^ /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/function.cpp:110:9: note: in expansion of macro 'Py_TYPE' Py_TYPE(&function_type) = &PyType_Type; ^ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/inheritance.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/life_support.o In file included from /usr/include/python2.6/Python.h:80:0, from ./boost/python/detail/wrap_python.hpp:151, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/object/life_support.hpp:7, from libs/python/src/object/life_support.cpp:5: libs/python/src/object/life_support.cpp: In function 'PyObject* boost::python::objects::make_nurse_and_patient(PyObject*, PyObject*)': /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/life_support.cpp:94:9: note: in expansion of macro 'Py_TYPE' if (Py_TYPE(&life_support_type) == 0) ^~~~~~~ /usr/include/python2.6/object.h:115:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ libs/python/src/object/life_support.cpp:96:9: note: in expansion of macro 'Py_TYPE' Py_TYPE(&life_support_type) = &PyType_Type; ^~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/pickle_support.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/value_is_xxx.hpp:13, from ./boost/python/detail/value_is_shared_ptr.hpp:10, from ./boost/python/to_python_value.hpp:23, from ./boost/python/default_call_policies.hpp:10, from ./boost/python/make_function.hpp:10, from libs/python/src/object/pickle_support.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/to_python_value.hpp:14, from ./boost/python/default_call_policies.hpp:10, from ./boost/python/make_function.hpp:10, from libs/python/src/object/pickle_support.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/errors.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/module.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/scope.hpp:9, from libs/python/src/module.cpp:9: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/scope.hpp:9, from libs/python/src/module.cpp:9: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/converter/builtin_converters.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/converter/arg_to_python_base.o gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/iterator.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/function_object.hpp:9, from libs/python/src/object/iterator.cpp:7: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:29, from ./boost/function/function2.hpp:11, from ./boost/python/object/function_object.hpp:8, from libs/python/src/object/iterator.cpp:7: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/stl_iterator.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from libs/python/src/object/stl_iterator.cpp:10: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from libs/python/src/object/stl_iterator.cpp:10: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object_protocol.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object_protocol.hpp:11, from libs/python/src/object_protocol.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object_protocol.hpp:11, from libs/python/src/object_protocol.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object_operators.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object_operators.hpp:10, from libs/python/src/object_operators.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object_operators.hpp:10, from libs/python/src/object_operators.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ ...on 100th target... gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/wrapper.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/extract.hpp:16, from ./boost/python/override.hpp:13, from ./boost/python/wrapper.hpp:8, from libs/python/src/wrapper.cpp:5: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/python/converter/registered.hpp:16, from ./boost/python/converter/return_from_python.hpp:10, from ./boost/python/override.hpp:11, from ./boost/python/wrapper.hpp:8, from libs/python/src/wrapper.cpp:5: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/import.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/import.hpp:8, from libs/python/src/import.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/import.hpp:8, from libs/python/src/import.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/exec.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/exec.hpp:8, from libs/python/src/exec.cpp:6: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/python/exec.hpp:8, from libs/python/src/exec.cpp:6: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/object/function_doc_signature.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object/function.hpp:12, from ./boost/python/object/function_doc_signature.hpp:8, from libs/python/src/object/function_doc_signature.cpp:10: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/object/function.hpp:9, from ./boost/python/object/function_doc_signature.hpp:8, from libs/python/src/object/function_doc_signature.cpp:10: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.link.dll bin.v2/libs/python/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/libboost_python.so.1.66.0 common.copy stage/lib/libboost_python.so.1.66.0 ln-UNIX stage/lib/libboost_python.so gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/serialize.o In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/ssize_t.hpp:9, from ./boost/python/object.hpp:8, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/serialize.cpp:13: /usr/include/python2.6/pyconfig-64.h:1034:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/cstddef:49, from ./boost/config/compiler/gcc.hpp:165, from ./boost/config.hpp:39, from ./boost/mpi/config.hpp:21, from ./boost/mpi/python/config.hpp:15, from ./boost/mpi/python/serialize.hpp:23, from libs/mpi/src/python/serialize.cpp:13: /usr/include/features.h:162:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/ssize_t.hpp:9, from ./boost/python/object.hpp:8, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/serialize.cpp:13: /usr/include/python2.6/pyconfig-64.h:1043:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/cstddef:49, from ./boost/config/compiler/gcc.hpp:165, from ./boost/config.hpp:39, from ./boost/mpi/config.hpp:21, from ./boost/mpi/python/config.hpp:15, from ./boost/mpi/python/serialize.hpp:23, from libs/mpi/src/python/serialize.cpp:13: /usr/include/features.h:164:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/serialize.cpp:13: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/serialize.cpp:13: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from libs/mpi/src/python/serialize.cpp:13:0: ./boost/mpi/python/serialize.hpp: In function 'void boost::python::detail::load_impl(Archiver&, boost::python::api::object&, unsigned int, mpl_::false_)': ./boost/mpi/python/serialize.hpp:445:8: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<char> string(new char[len]); ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/serialize.cpp:13: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from libs/mpi/src/python/serialize.cpp:13:0: libs/mpi/src/python/serialize.cpp: At global scope: ./boost/mpi/python/serialize.hpp:120:31: warning: type attributes ignored after type is already defined [-Wattributes] class BOOST_MPI_PYTHON_DECL direct_serialization_table< IArchiver , OArchiver >; \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./boost/mpi/python/serialize.hpp:120:31: note: in definition of macro 'BOOST_PYTHON_DIRECT_SERIALIZATION_ARCHIVE_IMPL' class BOOST_MPI_PYTHON_DECL direct_serialization_table< IArchiver , OArchiver >; \ ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc.link.dll bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/libboost_mpi_python.so.1.66.0 common.copy stage/lib/libboost_mpi_python.so.1.66.0 ln-UNIX stage/lib/libboost_mpi_python.so gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/collectives.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/collectives.cpp:14: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/collectives.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from libs/mpi/src/python/collectives.cpp:16:0: ./boost/mpi/python/serialize.hpp: In function 'void boost::python::detail::load_impl(Archiver&, boost::python::api::object&, unsigned int, mpl_::false_)': ./boost/mpi/python/serialize.hpp:445:8: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<char> string(new char[len]); ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/collectives.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/py_communicator.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/py_communicator.cpp:14: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_communicator.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from libs/mpi/src/python/py_communicator.cpp:16:0: ./boost/mpi/python/serialize.hpp: In function 'void boost::python::detail::load_impl(Archiver&, boost::python::api::object&, unsigned int, mpl_::false_)': ./boost/mpi/python/serialize.hpp:445:8: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<char> string(new char[len]); ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_communicator.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/datatypes.o In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/ssize_t.hpp:9, from ./boost/python/object.hpp:8, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/datatypes.cpp:13: /usr/include/python2.6/pyconfig-64.h:1034:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/cstddef:49, from ./boost/config/compiler/gcc.hpp:165, from ./boost/config.hpp:39, from ./boost/mpi/config.hpp:21, from ./boost/mpi/python/config.hpp:15, from ./boost/mpi/python/serialize.hpp:23, from libs/mpi/src/python/datatypes.cpp:13: /usr/include/features.h:162:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/ssize_t.hpp:9, from ./boost/python/object.hpp:8, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/datatypes.cpp:13: /usr/include/python2.6/pyconfig-64.h:1043:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/cstddef:49, from ./boost/config/compiler/gcc.hpp:165, from ./boost/config.hpp:39, from ./boost/mpi/config.hpp:21, from ./boost/mpi/python/config.hpp:15, from ./boost/mpi/python/serialize.hpp:23, from libs/mpi/src/python/datatypes.cpp:13: /usr/include/features.h:164:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/datatypes.cpp:13: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/datatypes.cpp:13: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from libs/mpi/src/python/datatypes.cpp:13:0: ./boost/mpi/python/serialize.hpp: In function 'void boost::python::detail::load_impl(Archiver&, boost::python::api::object&, unsigned int, mpl_::false_)': ./boost/mpi/python/serialize.hpp:445:8: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<char> string(new char[len]); ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/config/no_tr1/memory.hpp:21, from ./boost/get_pointer.hpp:14, from ./boost/python/object/pointer_holder.hpp:11, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/object.hpp:9, from ./boost/mpi/python/serialize.hpp:25, from libs/mpi/src/python/datatypes.cpp:13: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/documentation.o gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/py_environment.o In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/args.hpp:8, from ./boost/python.hpp:11, from libs/mpi/src/python/py_environment.cpp:17: /usr/include/python2.6/pyconfig-64.h:1034:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/localefwd.h:39, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/locale:38, from libs/mpi/src/python/py_environment.cpp:15: /usr/include/features.h:162:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/args.hpp:8, from ./boost/python.hpp:11, from libs/mpi/src/python/py_environment.cpp:17: /usr/include/python2.6/pyconfig-64.h:1043:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/localefwd.h:39, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/locale:38, from libs/mpi/src/python/py_environment.cpp:15: /usr/include/features.h:164:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/py_environment.cpp:17: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/locale_conv.h:41:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/locale:43, from libs/mpi/src/python/py_environment.cpp:15: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/py_nonblocking.o In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/args.hpp:8, from ./boost/python.hpp:11, from libs/mpi/src/python/py_nonblocking.cpp:21: /usr/include/python2.6/pyconfig-64.h:1034:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/stl_algobase.h:59, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/vector:60, from libs/mpi/src/python/py_nonblocking.cpp:17: /usr/include/features.h:162:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/include/python2.6/pyconfig.h:6:0, from ./boost/python/detail/wrap_python.hpp:50, from ./boost/python/detail/prefix.hpp:13, from ./boost/python/args.hpp:8, from ./boost/python.hpp:11, from libs/mpi/src/python/py_nonblocking.cpp:21: /usr/include/python2.6/pyconfig-64.h:1043:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:0, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/x86_64-pc-linux-gnu/bits/c++config.h:507, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/stl_algobase.h:59, from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/vector:60, from libs/mpi/src/python/py_nonblocking.cpp:17: /usr/include/features.h:164:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/py_nonblocking.cpp:21: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_nonblocking.cpp:21: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ libs/mpi/src/python/py_nonblocking.cpp:68:8: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<request_list> make_request_list_from_py_list(object iterable) ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_nonblocking.cpp:21: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ libs/mpi/src/python/py_nonblocking.cpp: In function 'std::auto_ptr<std::vector<boost::mpi::python::request_with_value> > {anonymous}::make_request_list_from_py_list(boost::python::api::object)': libs/mpi/src/python/py_nonblocking.cpp:70:10: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<request_list> result(new request_list); ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_nonblocking.cpp:21: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/py_exception.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/py_exception.cpp:15: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_exception.cpp:15: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/module.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/module.cpp:14: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/module.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/py_request.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/py_request.cpp:14: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_request.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/skeleton_and_content.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from ./boost/mpi/python/skeleton_and_content.hpp:15, from libs/mpi/src/python/skeleton_and_content.cpp:13: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from ./boost/mpi/python/skeleton_and_content.hpp:15, from libs/mpi/src/python/skeleton_and_content.cpp:13: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ In file included from ./boost/mpi/python/skeleton_and_content.hpp:20:0, from libs/mpi/src/python/skeleton_and_content.cpp:13: ./boost/mpi/python/serialize.hpp: In function 'void boost::python::detail::load_impl(Archiver&, boost::python::api::object&, unsigned int, mpl_::false_)': ./boost/mpi/python/serialize.hpp:445:8: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr<char> string(new char[len]); ^~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from ./boost/mpi/python/skeleton_and_content.hpp:15, from libs/mpi/src/python/skeleton_and_content.cpp:13: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/status.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/status.cpp:14: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/status.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.compile.c++ bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/python/py_timer.o In file included from ./boost/python/detail/is_xxx.hpp:8:0, from ./boost/python/detail/is_auto_ptr.hpp:9, from ./boost/python/detail/copy_ctor_mutates_rhs.hpp:8, from ./boost/python/detail/value_arg.hpp:7, from ./boost/python/object/forward.hpp:10, from ./boost/python/object/pointer_holder.hpp:16, from ./boost/python/to_python_indirect.hpp:10, from ./boost/python/converter/arg_to_python.hpp:10, from ./boost/python/call.hpp:15, from ./boost/python/object_core.hpp:14, from ./boost/python/args.hpp:22, from ./boost/python.hpp:11, from libs/mpi/src/python/py_timer.cpp:14: ./boost/python/detail/is_auto_ptr.hpp:17:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^ ./boost/detail/is_xxx.hpp:20:4: note: in definition of macro 'BOOST_DETAIL_IS_XXX_DEF' qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) > \ ^~~~~~~~~~~~~~ ./boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro 'BOOST_PYTHON_IS_XXX_DEF' BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/memory:81:0, from ./boost/function/function_base.hpp:16, from ./boost/function/detail/prologue.hpp:17, from ./boost/function/function_template.hpp:13, from ./boost/function/detail/maybe_include.hpp:15, from ./boost/function/function0.hpp:11, from ./boost/python/errors.hpp:13, from ./boost/python/handle.hpp:11, from ./boost/python/args_fwd.hpp:10, from ./boost/python/args.hpp:10, from ./boost/python.hpp:11, from libs/mpi/src/python/py_timer.cpp:14: /cluster/software/VERSIONS/gcc-6.3.0/include/c++/6.3.0/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^~~~~~~~ gcc.link.dll bin.v2/libs/mpi/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/mpi.so common.copy stage/lib/mpi.so gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_text_wiprimitive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/basic_text_woprimitive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/text_wiarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/text_woarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_wgrammar.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_wiarchive.o gcc.compile.c++ bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/xml_woarchive.o In file included from ./boost/archive/impl/xml_woarchive_impl.ipp:41:0, from libs/serialization/src/xml_woarchive.cpp:28: ./boost/archive/iterators/wchar_from_mb.hpp: In instantiation of 'void boost::archive::iterators::wchar_from_mb<Base>::drain() [with Base = boost::archive::iterators::xml_escape<const char*>]': ./boost/archive/iterators/wchar_from_mb.hpp:133:14: required from 'boost::archive::iterators::wchar_from_mb<Base>::wchar_from_mb(T) [with T = const char*; Base = boost::archive::iterators::xml_escape<const char*>]' ./boost/archive/impl/xml_woarchive_impl.ipp:58:9: required from 'void boost::archive::save_iterator(std::wostream&, InputIterator, InputIterator) [with InputIterator = const char*; std::wostream = std::basic_ostream<wchar_t>]' ./boost/archive/impl/xml_woarchive_impl.ipp:99:17: required from 'void boost::archive::xml_woarchive_impl<Archive>::save(const char*) [with Archive = boost::archive::xml_woarchive]' libs/serialization/src/xml_woarchive.cpp:35:16: required from here ./boost/archive/iterators/wchar_from_mb.hpp:168:31: warning: unused variable 'r' [-Wunused-variable] std::codecvt_base::result r = m_codecvt_facet.in( ^ gcc.link.dll bin.v2/libs/serialization/build/gcc-gnu-6.3.0/release/threadapi-pthread/threading-multi/libboost_wserialization.so.1.66.0 common.copy stage/lib/libboost_wserialization.so.1.66.0 ln-UNIX stage/lib/libboost_wserialization.so ...updated 135 targets... The Boost C++ Libraries were successfully built! The following directory should be added to compiler include paths: /cluster/home/guidopb/software/cmdstan-2.18.0/stan/lib/stan_math/lib/boost_1.66.0 The following directory should be added to linker library paths: /cluster/home/guidopb/software/cmdstan-2.18.0/stan/lib/stan_math/lib/boost_1.66.0/stage/lib clang++ -Wall -I . -isystem lib/eigen_3.3.3 -isystem lib/boost_1.66.0 -isystem lib/sundials_3.1.0/include -std=c++1y -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -Wno-unused-function -Wno-uninitialized -DGTEST_USE_OWN_TR1_TUPLE -DGTEST_HAS_PTHREAD=0 -isystem lib/gtest_1.7.0/include -isystem lib/gtest_1.7.0 -O3 -DSTAN_MPI -DNO_FPRINTF_OUTPUT -pipe -c -c -O0 -o bin/math/prim/arr/functor/mpi_cluster_inst.o -fPIC -DSTAN_MPI stan/math/prim/arr/functor/mpi_cluster_inst.cpp make: clang++: Command not found make: *** [bin/math/prim/arr/functor/mpi_cluster_inst.o] Error 127 make -j1 test/unit/math/prim/mat/functor/map_rect_test failed exit now (10/15/18 10:21:06 CEST)